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 External Resources

 scienced...in.pdfhttps://www.sciencedirect.com/science/article/pii/S0092867425002090/pdfft?md5=3b19a36c1b26d6ae2b15cbcec9ec1f84&pid=1-s2.0-S0092867425002090-main.pdf  Article fulltext

 GSE94982https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE94982  NCBI GEO Dataset (GSE94982, reused)

 10090https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=10090  NCBI taxonomy (mouse, Mus musculus)

 0000-0002-8902-0184https://orcid.org/0000-0002-8902-0184  ORCID identifier (Wenxue Li)

 0000-0002-6302-3512https://orcid.org/0000-0002-6302-3512  ORCID identifier (Abhijit Dasgupta)

 0000-0001-8937-7397https://orcid.org/0000-0001-8937-7397  ORCID identifier (Ka Yang)

 0000-0001-5397-3242https://orcid.org/0000-0001-5397-3242  ORCID identifier (Nisha Hemandhar-Kumar)

 0000-0002-7689-6398https://orcid.org/0000-0002-7689-6398  ORCID identifier (Surendhar Reddy Chepyala)

 0000-0003-1793-5630https://orcid.org/0000-0003-1793-5630  ORCID identifier (Jay M. Yarbro)

 0000-0003-2478-0083https://orcid.org/0000-0003-2478-0083  ORCID identifier (Zhenyi Hu)

 0000-0002-7093-4576https://orcid.org/0000-0002-7093-4576  ORCID identifier (Barbora Salovska)

 0000-0001-7643-4962https://orcid.org/0000-0001-7643-4962  ORCID identifier (Eugenio F. Fornasiero)

 0000-0003-0472-7648https://orcid.org/0000-0003-0472-7648  ORCID identifier (Junmin Peng)

 0000-0002-2626-3912https://orcid.org/0000-0002-2626-3912  ORCID identifier (Yansheng Liu)

 PXD055942http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD055942  Pride proteome dataset (PXD055942)

 02r3e0967https://ror.org/02r3e0967  ROR identifier (02r3e0967, St. Jude Children's Research Hospital)

 021ft0n22https://ror.org/021ft0n22  ROR identifier (021ft0n22, University Medical Center Göttingen)

 02n742c10https://ror.org/02n742c10  ROR identifier (02n742c10, University of Trieste)

 007mrxy13https://ror.org/007mrxy13  ROR identifier (007mrxy13, West China Hospital of Sichuan University)

 03v76x132https://ror.org/03v76x132  ROR identifier (03v76x132, Yale University)

 SCR_019214https://scicrunch.org/resolver/SCR_019214  SciCrunch identifier (RRID:SCR_019214, biomaRt)

 SCR_018361https://scicrunch.org/resolver/SCR_018361  SciCrunch identifier (RRID:SCR_018361, Biorender)

 SCR_023081https://scicrunch.org/resolver/SCR_023081  SciCrunch identifier (RRID:SCR_023081, Corrplot)

 SCR_003032https://scicrunch.org/resolver/SCR_003032  SciCrunch identifier (RRID:SCR_003032, Cytoscape)

 SCR_001881https://scicrunch.org/resolver/SCR_001881  SciCrunch identifier (RRID:SCR_001881, DAVID)

 SCR_002344https://scicrunch.org/resolver/SCR_002344  SciCrunch identifier (RRID:SCR_002344, Ensembl)

 SCR_016692https://scicrunch.org/resolver/SCR_016692  SciCrunch identifier (RRID:SCR_016692, factoextra)

 SCR_002285https://scicrunch.org/resolver/SCR_002285  SciCrunch identifier (RRID:SCR_002285, Fiji)

 SCR_014601https://scicrunch.org/resolver/SCR_014601  SciCrunch identifier (RRID:SCR_014601, ggplot2)

 SCR_002798https://scicrunch.org/resolver/SCR_002798  SciCrunch identifier (RRID:SCR_002798, GraphPad Prism)

 SCR_016620https://scicrunch.org/resolver/SCR_016620  SciCrunch identifier (RRID:SCR_016620, Metascape)

 SCR_015753https://scicrunch.org/resolver/SCR_015753  SciCrunch identifier (RRID:SCR_015753, Perseus)

 SCR_016418https://scicrunch.org/resolver/SCR_016418  SciCrunch identifier (RRID:SCR_016418, pheatmap)

 SCR_001905https://scicrunch.org/resolver/SCR_001905  SciCrunch identifier (RRID:SCR_001905, R Project for Statistical Computing)

 SCR_001626https://scicrunch.org/resolver/SCR_001626  SciCrunch identifier (RRID:SCR_001626, Shiny)

 SCR_020558https://scicrunch.org/resolver/SCR_020558  SciCrunch identifier (RRID:SCR_020558, Thermo Q Exactive HF Hybrid Quadrupole-Orbitrap Mass Spectrometer)

 SCR_018042https://scicrunch.org/resolver/SCR_018042  SciCrunch identifier (RRID:SCR_018042, Thermo Scientific Nanodrop 2000 microvolume spectrophotometer)

 SCR_020562https://scicrunch.org/resolver/SCR_020562  SciCrunch identifier (RRID:SCR_020562, Thermo Scientific Orbitrap Fusion Lumos Tribrid Mass Spectrometer)

 SCR_026112https://scicrunch.org/resolver/SCR_026112  SciCrunch identifier (RRID:SCR_026112, UpSetR)

 github.c...suePPThttps://github.com/yslproteomics/tissuePPT  Supplemental material (code)

 github.com/JUMPSuite/JUMPthttps://github.com/JUMPSuite/JUMPt  Supplemental material (code, reused)

 ars.els-...1.xlsxhttps://ars.els-cdn.com/content/image/1-s2.0-S0092867425002090-mmc1.xlsx  Supplemental material (table)

 ars.els-...2.xlsxhttps://ars.els-cdn.com/content/image/1-s2.0-S0092867425002090-mmc2.xlsx  Supplemental material (table)

 10.5281/zenodo.14671026https://doi.org/10.5281/zenodo.14671026  Zenodo identifier (10.5281/zenodo.14671026)