External Resources
48645https://www.addgene.org/48645
Addgene identifier (48645, reused)
nature.c...-2.pdfhttps://www.nature.com/articles/s41586-023-06429-2.pdf
Article fulltext
141https://www.ncbi.nlm.nih.gov/gene/141
NCBI gene (141)
947672https://www.ncbi.nlm.nih.gov/gene/947672
NCBI gene (947672, reused)
947820https://www.ncbi.nlm.nih.gov/gene/947820
NCBI gene (947820, reused)
1258568https://www.ncbi.nlm.nih.gov/gene/1258568
NCBI gene (1258568, reused)
1258688https://www.ncbi.nlm.nih.gov/gene/1258688
NCBI gene (1258688, reused)
1258760https://www.ncbi.nlm.nih.gov/gene/1258760
NCBI gene (1258760, reused)
75205313https://www.ncbi.nlm.nih.gov/gene/75205313
NCBI gene (75205313, reused)
GSE214431https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE214431
NCBI GEO Dataset (GSE214431)
NC_000866.4https://www.ncbi.nlm.nih.gov/nuccore/NC_000866.4
NCBI nucleotide (NC_000866.4, reused)
U00096.3https://www.ncbi.nlm.nih.gov/nuccore/U00096.3
NCBI nucleotide (U00096.3, reused)
37762https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=37762
NCBI taxonomy (Escherichia coli B)
511693https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=511693
NCBI taxonomy (Escherichia coli BL21)
2681598https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2681598
NCBI taxonomy (Escherichia phage T4)
0000-0001-6988-2775https://orcid.org/0000-0001-6988-2775
ORCID identifier (Maik Wolfram-Schauerte)
0000-0003-2468-4235https://orcid.org/0000-0003-2468-4235
ORCID identifier (Nadiia Pozhydaieva)
0000-0002-7639-358Xhttps://orcid.org/0000-0002-7639-358X
ORCID identifier (Julia Grawenhoff)
0000-0001-8284-954Xhttps://orcid.org/0000-0001-8284-954X
ORCID identifier (Ivan Silbern)
0009-0003-3257-456Xhttps://orcid.org/0009-0003-3257-456X
ORCID identifier (Franziska Anna Billau)
0000-0001-8716-8516https://orcid.org/0000-0001-8716-8516
ORCID identifier (Timo Glatter)
0000-0003-1837-5233https://orcid.org/0000-0003-1837-5233
ORCID identifier (Henning Urlaub)
0000-0002-4625-2655https://orcid.org/0000-0002-4625-2655
ORCID identifier (Andres Jäschke)
0000-0002-7472-9887https://orcid.org/0000-0002-7472-9887
ORCID identifier (Katharina Höfer)
PXD038910http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD038910
Pride proteome dataset (PXD038910)
PXD041714http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD041714
Pride proteome dataset (PXD041714)
743https://prod.mbexc.uni-goettingen.de/literature/publications/743
Published Data Registry entry (MBExC)
15https://rdp.sfb1565.uni-goettingen.de/literature/publications/15
Published Data Registry entry (CRC 1565)
2KHIhttps://www.rcsb.org/structure/2KHI
RCSB PDB Identifier (DOI:10.2210/pdb2KHI/pdb, reused)
2KHJhttps://www.rcsb.org/structure/2KHJ
RCSB PDB Identifier (DOI:10.2210/pdb2KHJ/pdb, reused)
2MFIhttps://www.rcsb.org/structure/2MFI
RCSB PDB Identifier (DOI:10.2210/pdb2MFI/pdb, reused)
2MFLhttps://www.rcsb.org/structure/2MFL
RCSB PDB Identifier (DOI:10.2210/pdb2MFL/pdb, reused)
5XQ5https://www.rcsb.org/structure/5XQ5
RCSB PDB Identifier (DOI:10.2210/pdb5XQ5/pdb, reused)
6H4Nhttps://www.rcsb.org/structure/6H4N
RCSB PDB Identifier (DOI:10.2210/pdb6H4N/pdb, reused)
7K00https://www.rcsb.org/structure/7K00
RCSB PDB Identifier (DOI:10.2210/pdb7K00/pdb, reused)
1/229https://mbexc.uni-goettingen.de/archive/1/229
Research Data Archive MBExC (supplemental material)
038t36y30https://ror.org/038t36y30
ROR identifier (038t36y30, Heidelberg University)
03av75f26https://ror.org/03av75f26
ROR identifier (03av75f26, Max Planck Institute for Multidisciplinary Sciences)
05r7n9c40https://ror.org/05r7n9c40
ROR identifier (05r7n9c40, Max Planck Institute for Terrestrial Microbiology)
05xy1nn52https://ror.org/05xy1nn52
ROR identifier (05xy1nn52, Multiscale Bioimaging)
01rdrb571https://ror.org/01rdrb571
ROR identifier (01rdrb571, Philipps University of Marburg)
021ft0n22https://ror.org/021ft0n22
ROR identifier (021ft0n22, University Medical Center Göttingen)
SCR_015058https://scicrunch.org/resolver/SCR_015058
SciCrunch identifier (RRID:SCR_015058, bcl2fastq)
SCR_011841https://scicrunch.org/resolver/SCR_011841
SciCrunch identifier (RRID:SCR_011841, cutadapt)
SCR_012919https://scicrunch.org/resolver/SCR_012919
SciCrunch identifier (RRID:SCR_012919, featureCounts)
SCR_014583https://scicrunch.org/resolver/SCR_014583
SciCrunch identifier (RRID:SCR_014583, FastQC)
SCR_021139https://scicrunch.org/resolver/SCR_021139
SciCrunch identifier (RRID:SCR_021139, ggpubr)
SCR_015530https://scicrunch.org/resolver/SCR_015530
SciCrunch identifier (RRID:SCR_015530, HISAT2)
SCR_014210https://scicrunch.org/resolver/SCR_014210
SciCrunch identifier (RRID:SCR_014210, Image Lab Software)
SCR_014246https://scicrunch.org/resolver/SCR_014246
SciCrunch identifier (RRID:SCR_014246, ImageQuant)
SCR_011793https://scicrunch.org/resolver/SCR_011793
SciCrunch identifier (RRID:SCR_011793, Integrative Genomics Viewer)
SCR_014485https://scicrunch.org/resolver/SCR_014485
SciCrunch identifier (RRID:SCR_014485, MaxQuant)
SCR_016137https://scicrunch.org/resolver/SCR_016137
SciCrunch identifier (RRID:SCR_016137, Microsoft Excel)
SCR_012042https://scicrunch.org/resolver/SCR_012042
SciCrunch identifier (RRID:SCR_012042, OpenMS)
SCR_014212https://scicrunch.org/resolver/SCR_014212
SciCrunch identifier (RRID:SCR_014212, Origin)
SCR_003411https://scicrunch.org/resolver/SCR_003411
SciCrunch identifier (RRID:SCR_003411, PRIDE)
SCR_014477https://scicrunch.org/resolver/SCR_014477
SciCrunch identifier (RRID:SCR_014477, Proteome Discoverer)
SCR_004055https://scicrunch.org/resolver/SCR_004055
SciCrunch identifier (RRID:SCR_004055, ProteomeXchange)
SCR_000305https://scicrunch.org/resolver/SCR_000305
SciCrunch identifier (RRID:SCR_000305, PyMOL)
SCR_001905https://scicrunch.org/resolver/SCR_001905
SciCrunch identifier (RRID:SCR_001905, R Project for Statistical Computing)
SCR_002105https://scicrunch.org/resolver/SCR_002105
SciCrunch identifier (RRID:SCR_002105, Samtools)
SCR_014345https://scicrunch.org/resolver/SCR_014345
SciCrunch identifier (RRID:SCR_014345, Scaffold Proteome Software)
SCR_009803https://scicrunch.org/resolver/SCR_009803
SciCrunch identifier (RRID:SCR_009803, Subread)
SCR_020563https://scicrunch.org/resolver/SCR_020563
SciCrunch identifier (RRID:SCR_020563, Thermo Scientific Dionex Ultimate 3000 system)
SCR_016517https://scicrunch.org/resolver/SCR_016517
SciCrunch identifier (RRID:SCR_016517, Thermo Scientific Nanodrop 1000 Spectrophotometer)
SCR_004129https://scicrunch.org/resolver/SCR_004129
SciCrunch identifier (RRID:SCR_004129, Zenodo)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41586-023-06429-2/MediaObjects/41586_2023_6429_MOESM1_ESM.pdf
Supplemental material
colab.re....ipynbhttps://colab.research.google.com/github/sokrypton/ColabFold/blob/main/AlphaFold2.ipynb
Supplemental material (code, reused)
goeseek.gwdguser.de/studies/68https://goeseek.gwdguser.de/studies/68
Supplemental material (goeseek study)
static-c...SM.pdfhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41586-023-06429-2/MediaObjects/41586_2023_6429_MOESM2_ESM.pdf
Supplemental material (reporting summary)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41586-023-06429-2/MediaObjects/41586_2023_6429_MOESM3_ESM.xlsx
Supplemental material (table)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41586-023-06429-2/MediaObjects/41586_2023_6429_MOESM4_ESM.xlsx
Supplemental material (table)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41586-023-06429-2/MediaObjects/41586_2023_6429_MOESM5_ESM.xlsx
Supplemental material (table)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41586-023-06429-2/MediaObjects/41586_2023_6429_MOESM6_ESM.xlsx
Supplemental material (table)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41586-023-06429-2/MediaObjects/41586_2023_6429_MOESM7_ESM.xlsx
Supplemental material (table)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41586-023-06429-2/MediaObjects/41586_2023_6429_MOESM8_ESM.xlsx
Supplemental material (table)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41586-023-06429-2/MediaObjects/41586_2023_6429_MOESM10_ESM.xlsx
Supplemental material (table)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41586-023-06429-2/MediaObjects/41586_2023_6429_MOESM9_ESM.xlsx
Supplemental material (table)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41586-023-06429-2/MediaObjects/41586_2023_6429_MOESM11_ESM.xlsx
Supplemental material (table)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41586-023-06429-2/MediaObjects/41586_2023_6429_MOESM12_ESM.xlsx
Supplemental material (table)
static-c...M.xlsxhttps://static-content.springer.com/esm/art%3A10.1038%2Fs41586-023-06429-2/MediaObjects/41586_2023_6429_MOESM13_ESM.xlsx
Supplemental material (table)
P0AG67https://www.uniprot.org/uniprot/P0AG67
UniProt identifier (P0AG67, reused)
P12726https://www.uniprot.org/uniprot/P12726
UniProt identifier (P12726, reused)
P39421https://www.uniprot.org/uniprot/P39421
UniProt identifier (P39421, reused)
P39423https://www.uniprot.org/uniprot/P39423
UniProt identifier (P39423, reused)
P05055https://www.uniprot.org/uniprot/P05055
UniProt identifier (P05055, reused)
P54922https://www.uniprot.org/uniprot/P54922
UniProt identifier (P54922, reused)
P60422https://www.uniprot.org/uniprot/P60422
UniProt identifier (P60422, reused)
uniprot....000625https://www.uniprot.org/proteomes/https://www.uniprot.org/proteomes/UP000000625
UniProt Proteome identifier (UP000000625, reused)
10.5281/zenodo.7977386https://doi.org/10.5281/zenodo.7977386
Zenodo identifier (10.5281/zenodo.7977386)
